Eelgrass in the South Shore Estuary Reserve

Conservation and Restoration

Eelgrass Plays Many Important Roles

Why is eelgrass important?

Eelgrass (Zostera marina) is a type of underwater marine plant found throughout the Northeast Atlantic coast. It is the most abundant seagrass species found in Long Island’s South Shore Estuary Reserve (SSER). Seagrasses are rooted plants that produce flowers and form extensive meadows in shallow coastal waters with sandy and rocky sediment. Eelgrass reproduces both through seed distribution, and through lateral shoots or smaller clones that grow from the main plant. Seagrass beds provide direct benefits in the form of nutrient cycling, sediment stability, wave energy reduction, carbon sequestration, sources of food, and nursery functions which support commercial fisheries, tourism revenues, atmospheric carbon reduction, coastline integrity and coastal property values.

Explore a few examples of why eelgrass is important:  

Coastal Resilience

Eelgrass leaves extend up into the water column, slowing down water currents and reducing the wave energy that reaches the shore. In addition to buffering wave action, the plants’ leaves help to settle floating particulates, adding to the sediment trapped in the root systems roots and rhizomes help to stabilize the bay bottom. This helps to reduce erosion on adjacent shorelines. 

Coastal Habitat

Eelgrass meadows are some of the most biodiverse habitats on Earth, even more diverse than coral reefs and rainforests, supporting many different species. 1  Eelgrass provides shelter for finfish and shellfish to live, reproduce, and hide from predators. Species that use eelgrass include seahorses, bay scallops, finfish (e.g., tautog, summer flounder, and black sea bass), sea turtles and birds. Many marine species also use eelgrass meadows as a “nursery” or safe space for young fishes and invertebrates, such as juvenile scallops called “spat.”

 1  Cornell Cooperative Extension of Suffolk County. (2017).  Eelgrass as a habitat . 


 This image illustrates the many important relationships that different marine species have with eelgrass meadows. Symbols for this graphic were obtained courtesy of the  Integration and Application Network, University of Maryland Center for Environmental Science . 

Eelgrass provides protection. The leafy underwater habitat created by eelgrass meadows provides shelter for small invertebrates and fish, and juveniles of larger fish species. Due to the level of protection provided, many species use eelgrass meadows as nursery areas for young to grow and mature. In the SSER, squid lay eggs on blades of eelgrass. Eelgrass also provides structure. Eelgrass meadows in the SSER are the preferred home of many species due to the structure they provide. Seahorses wrap their tails around blades of eelgrass, using I as an anchor, to keep from floating away in the current. Young scallops, called “spat,” attach to eelgrass blades raised up off of the bay floor to protect them from predation by craps that are grazing on the bay floor.
Eelgrass provides protection. The leafy underwater habitat created by eelgrass meadows provides shelter for small invertebrates and fish, and juveniles of larger fish species. Due to the level of protection provided, many species use eelgrass meadows as nursery areas for young to grow and mature. In the SSER, squid lay eggs on blades of eelgrass. Eelgrass also provides structure. Eelgrass meadows in the SSER are the preferred home of many species due to the structure they provide. Seahorses wrap their tails around blades of eelgrass, using I as an anchor, to keep from floating away in the current. Young scallops, called “spat,” attach to eelgrass blades raised up off of the bay floor to protect them from predation by craps that are grazing on the bay floor.

Carbon Sequestration

Human activities such as the burning of fossil fuels and the clearing of forests contribute greatly to the amount of carbon dioxide (CO 2 ) in Earth’s atmosphere. Carbon dioxide is a naturally occurring component of Earth’s atmosphere, but when it is present in large amounts it can contribute to warming global temperatures and ocean acidification. Eelgrass meadows help mitigate climate change by absorbing carbon from the atmosphere and storing it in sediments. 2  One acre of seagrass is capable of absorbing and storing up to 740 pounds of carbon per year, the amount of carbon emitted by a car driving 3,860 miles per year. 3      2  NOAA. What is Blue Carbon?  National Ocean Service website , 07/24/19.    3  Reynolds, Pamela L. (2018, April).  Seagrass and Seagrass Beds . 


 Image citations:  

 National Science Foundation. (2012, May 21).  Seagrasses Can Store as Much Carbon as Forests . 

 Postlethwaite, V. R.; McGowan, A. E.; Robinson, C.; Kohfeld, K. E.; Pellatt, M. G.; Yakimishyn, J.; Chastain, S. G. (December 2016).  Assessing Carbon Storage and Sequestration of Seagrass Meadows on the Pacific Coast of Canada . Fall Meeting of the American Geophysical Union, San Francisco, CA. 

 Reynolds, Pamela L. (2018, April).  Seagrass and Seagrass Beds . 

What is Coastal Blue Carbon? Coastal ecosystems efficiently capture and store large amounts of carbon from the atmosphere. Blue carbon is the term used to describe the carbon captured by coastal and ocean ecosystems, such as marshlands and seagrass meadows. With 19,000 acres of tidal marshes and 10,227 acres of eelgrass beds, the South Shore Estuary Reserve (SSER) can potentially sequester 44 million pounds of carbon annually, with approximately 36.8 million pounds of carbon stored in SSER salt marshes and 7.4 million pounds of carbon stored in SSER eelgrass meadows annually (Reynolds, Pamela L, 2018). Carbon sequestration is the natural process of capturing and storing carbon dioxide present in the atmosphere by elements such as plants, soil, and the oceans. This storing of atmospheric carbon dioxide helps to offset climate change. Carbon storage: The soils in coastal wetlands are anaerobic, meaning they don’t contain oxygen. Carbon that gets incorporated into wetland soils breaks down very slowly and can remain for hundreds of years. Although seagrass meadows are present in less than 0.2% of the world’s oceans, they are responsible for more than 10% of all carbon stored in the sea every year (National Science Foundation, 2012). Seagrass bury and store carbon up to 10 times faster than terrestrial forests (Postlethwaite, V.R., et al. 2016).
What is Coastal Blue Carbon? Coastal ecosystems efficiently capture and store large amounts of carbon from the atmosphere. Blue carbon is the term used to describe the carbon captured by coastal and ocean ecosystems, such as marshlands and seagrass meadows. With 19,000 acres of tidal marshes and 10,227 acres of eelgrass beds, the South Shore Estuary Reserve (SSER) can potentially sequester 44 million pounds of carbon annually, with approximately 36.8 million pounds of carbon stored in SSER salt marshes and 7.4 million pounds of carbon stored in SSER eelgrass meadows annually (Reynolds, Pamela L, 2018). Carbon sequestration is the natural process of capturing and storing carbon dioxide present in the atmosphere by elements such as plants, soil, and the oceans. This storing of atmospheric carbon dioxide helps to offset climate change.   Carbon storage: The soils in coastal wetlands are anaerobic, meaning they don’t contain oxygen. Carbon that gets incorporated into wetland soils breaks down very slowly and can remain for hundreds of years. Although seagrass meadows are present in less than 0.2% of the world’s oceans, they are responsible for more than 10% of all carbon stored in the sea every year (National Science Foundation, 2012). Seagrass bury and store carbon up to 10 times faster than terrestrial forests (Postlethwaite, V.R., et al. 2016).

Economy

The SSER supports the highest density of recreational boating in the State. The seafood and sportfishing industries on Long Island play an important role in the local economy, and eelgrass plays a key role in the success of these industries. Many commercially valuable species including fluke, tautog, flounder, bass, porgy, blue crab, squid, hard clams, and lobster rely on eelgrass meadows as habitat at some stage in their life cycle. The presence of healthy eelgrass meadows is important for the survival of these commercially valuable species that support Long Island’s $2.5 billion ocean-related economy and tourism. 4 

 4   National Oceanic and Atmospheric Administration (NOAA). Economics: National Ocean Watch (ENOW) Data. Based on data from the Bureau of Labor Statistics and the Bureau of Economic Analysis. Charleston, SC: NOAA Office for Coastal Management.  


 Click or pinch to zoom into the map and click on the legend widget to expand the legend.  

Water Quality

Through the process of photosynthesis, eelgrass can increase oxygen levels in the water column by absorbing CO 2  and releasing oxygen into the water and sediment. This increased oxygen in the water column supports marine life, such as fish who use dissolved oxygen to breathe under water. Eelgrass can also uptake some of the excess nutrients that enter the water column and use them to grow. However, eelgrass alone cannot provide large scale reductions in nitrogen, underscoring the need for continued efforts to reduce nutrient loading in the estuary.


 Source graphics and symbols for this graphic courtesy of the  Integration and Application Network, University of Maryland Center for Environmental Science . 

Eelgrass on the Decline

Eelgrass Populations have declined due to a wide range of impacts 

Threats to eelgrass, such as wasting disease, caused historic declines in eelgrass populations dating back to the 1930’s. Since that time, changes to the environment from activities such as increasing coastal development and population growth also contributed to the decline of eelgrass. According to the Smithsonian Institute, globally, approximately two football fields of seagrass are lost every hour, with 29 percent of seagrass meadows having died off over the last 100 years 5  with even greater losses estimated in New York.

 5  Waycott, M., et al., 2009. Accelerating loss of seagrasses across the globe threatens coastal ecosystems. Proceedings of the national academy of sciences 106(30), 12377-12381.  

Explore factors that impact eelgrass populations and contribute to its decline:

Increasing Water Temperature

Eelgrass is a cold-water species found in the Northern Hemisphere whose range is limited by temperature. The preferred temperature for eelgrass growth is 58 to 68°F(14 to 20°C). Eelgrass can survive cooler winter temperatures by becoming dormant, but as water temperatures increase above this range, eelgrass plants cannot grow and begin to die off at approximately 77°F (25°C). With global climate change leading to warmer water temperatures, there is great concern for the ability of eelgrass populations to survive, especially in the embayments of the SSER where water temperatures can reach as high as 86°F (30°C) or greater in the summer months.


 Current and historical water temperature information was collected by the Suffolk County Department of Health Services (SCDHS). The accompanying graph was created from water temperature data from 1976 to 2019 at 29 sampling stations within Great South Bay. Observed temperatures, in degrees Fahrenheit (°F), for the months of June through September were averaged and are shown on the graph as light blue. The maximum observed temperature for these stations was selected for this same period and is shown on the graph in orange.  

Both the average and maximum summer temperatures trended upward from 1975 to 2020.

Poor Water Quality

Plants, including seagrasses, need nutrients to grow. Without sufficient nutrients available in a system, eelgrass cannot grow. However, excess nutrient input into the water from human-related sources, including outdated septic systems and fertilizer runoff, can fuel the growth of microalgae, macroalgae (seaweed) and other organisms that grow on seagrass (such as epiphytes), often leading to harmful algal blooms. The harmful algal blooms and increased growth in seaweed and epiphytes reduce the amount of sunlight reaching the bay bottom. Without sunlight available, eelgrass cannot photosynthesize, growth will slow down, and eelgrass will begin to die off. In addition to limiting the sunlight reaching the bay bottom, epiphytes and seaweed can smother seagrass plants which also limits their ability to photosynthesize.


 While too few nutrients prevent eelgrass from growing, too many nutrients can lead to loss of eelgrass.  

Graphic depicting the effect of increasing nutrients on seagrasses and other plants.

Coastal Development

Hardening of shorelines through the construction or reconstruction of seawalls, bulkheads, groins, jetties, breakwaters, boat ramps, boat docks, boat slips and other human-made coastal structures can contribute to the loss of eelgrass meadows. When waves hit natural shorelines, wave energy is absorbed and dispersed. When waves hit hardened shorelines, energy is reflected off hard structures back into the water and can damage or eliminate eelgrass (and other types of SAV) in the nearshore environment. Docks can shade eelgrass, reducing sunlight needed for photosynthesis, and boat ramps, docks, and slips increase the likelihood of boating-related impacts on eelgrass.

On a natural shoreline, sediment is trapped by shoreline vegetation and can accumulate over time. This also provides a shallow refuge. On a hardened shoreline, waves are reflected. Sediments are suspended back into the water and there is a loss of vegetation and shallow refuge.

Boating and Shellfish Harvesting Activities

Boating in shallow waters can cause propeller scarring, or “prop scars," in seagrass meadows when eelgrass blades are directly cut, or entangled in and uprooted, by boat engine propellers. Boats can also damage eelgrass meadows when they run aground or hit the bay bottom, or in the process of dropping, setting, and retrieving anchors over seagrass unintentionally destroying plants, breaking up continuous eelgrass meadows, and directly reducing eelgrass survival. Resuspension of sediments caused by the wake of motorboats may also scour seagrass plants and create turbidity, reducing the light they require for photosynthesis. 6 

Shellfish harvesting activities (e.g., dredging and raking) can also pose both direct and indirect risks to eelgrass. Dredges can rip up eelgrass beds and lower the level of light penetration by kicking up sediments and negatively effecting water clarity when they are dragged along the bay bottom. Impacts from these activities can be prevented by avoiding areas with eelgrass, trimming boat propellers, and drifting or poling when in eelgrass areas.

 6  Crawford, R. E. (2002). Secondary wake turbidity from small boat operation in a shallow sandy bay. Journal of Coastal Research, 50–65.  


 Prop scars in seagrass in Sinepuxent Bay in Coastal Maryland.  

Wasting Disease

In the 1930’s, wasting disease was responsible for the die off and loss of approximately 90 percent of the eelgrass in North America.  Wasting disease is a marine slime-mold that spreads through direct leaf to leaf contact. This slime-mold begins to break down eelgrass and reduces photosynthesis, eventually killing the eelgrass. Wasting disease is still present today and poses a risk to eelgrass populations, especially when eelgrass meadows are stressed by other factors such as those mentioned above, which make them more susceptible to disease. 

Helping Eelgrass Recover

Eelgrass is a valued resource that many groups are trying to protect

State, county and local groups are working across Long Island to help protect, effectively manage, and restore eelgrass populations through research, monitoring, citizen science, management, and habitat restoration. Continued monitoring and research are vital to understanding how to best protect, manage and restore eelgrass meadows in the Reserve.

Understanding Seagrass Trends: DOS SSER Benthic Habitat Survey

In 2018, a benthic habitat survey was conducted to map the seafloor habitat in the South Shore Estuary Reserve. This survey shows changes in habitat types on the bay bottom, such as eelgrass, within the SSER since the last survey was completed in 2002. The survey provides important information that can be used to guide future management and conservation of eelgrass meadows and other underwater habitats. The survey was carried out by NYS Department of State (DOS), the Governor’s Office of Storm Recovery (GOSR), and NOAA Office for Coastal Management, in partnership with NYS Department of Environmental Conservation (NYS DEC) and other partners.


New York State Department of Environmental Conservation (NYS DEC) Seagrass Management: Seagrass Task Force

In 2006, the NYS DEC was tasked to organize and chair an interagency Seagrass Task Force to discuss the state of seagrass and outline recommendations for its protection, management, and restoration. Following the completion of the  Final Report of the New York State Seagrass Task Force: Recommendations to the New York State Governor and Legislature  in 2009, regulations were modified to improve the DEC’s ability to regulate activities in and around SAV beds.


 This image shows a bayman clamming in eelgrass in the South Shore Estuary Reserve. 

Aerial image of a boat floating above eelgrass near shore.

Cornell Cooperative Extension of Suffolk County's Marine Program

The eelgrass program within Cornell Cooperative Extension (CCE) of Suffolk County’s Marine Program works to restore and monitor eelgrass across Long Island. This program tracks the health and extent of existing eelgrass meadows, conducts restoration, develops restoration techniques and models to increase restoration success, and works to expand public understanding of the importance of eelgrass on Long Island. CCE also operates the  Marine Meadows program , a citizen science program where the public can volunteer and assist with eelgrass restoration efforts by helping to assemble planting units.

The Peterson Marine Community Ecology Lab at Stony Brook School of Marine and Atmospheric Science (SoMAS) 

 Dr. Brad Peterson’s lab  researches threats and stressors to seagrass in New York’s marine waters. Research includes:

  • Stressors on seagrass ecosystems
  • Seagrass-animal interactions
  • Seagrass landscape ecology
  • Restoration ecology
  • Introduced and exotic marine species
  • Climate Change and ocean acidification

 A student from the SoMAS Peterson Lab collects eelgrass seeds from meadows in the South Shore Estuary Reserve.  

Community Restoration Efforts

Many groups in the SSER are involved in improving water quality and restoring eelgrass habitat. For example, the Town of Brookhaven is working with CCE’s Marine Program to restore eelgrass in the South Shore Estuary Reserve through an SSER grant-funded project. The grant awarded was for $49,975. CCE conducted plantings in 2018, 2019, and 2020, during which over 12,500 eelgrass shoots were planted by specially trained divers in Bellport and Moriches Bay. The Town of Brookhaven worked with Stony Brook University students to collect eelgrass seeds which were planted by CCE’s Marine Program to increase the acreage of eelgrass meadow restored through this project.